NAME
gt-tallymer-search - Search a set of k-mers in an index constructed by “gt tallymer mkindex”.
SYNOPSIS
gt tallymer search [options] -tyr tallymer-index -q queryfile0 [queryfile1..] [options]
DESCRIPTION
- -tyr [string]
-
specify tallymer-index (default: undefined)
- -q
-
specify query file names
- -strand [string]
-
specify the strand to be searched: use f (for forward strand) or p (for reverse complemented strand) or fp (for both); default is f (default: f)
- -output
-
specify output flags (qseqnum, qpos, counts, sequence)
- -v [yes|no]
-
be verbose (default: no)
- -help
-
display help and exit
- -version
-
display version information and exit
REPORTING BUGS
Report bugs to <kurtz@zbh.uni-hamburg.de>.