NAME
gt-tallymer-occratio - Compute occurrence ratio for a set of sequences represented by an enhanced suffix array.
SYNOPSIS
gt tallymer occratio [options] -esa suffixerator-index [options]
DESCRIPTION
- -esa [string]
-
specify suffixerator-index (mandatory option) (default: undefined)
- -minmersize [value]
-
specify minimum mer size for which to compute the occurrence distribution (default: 0)
- -maxmersize [value]
-
specify maximum mer size for which to compute the occurrence distribution (default: 0)
- -step [value]
-
specify step size when specifying mer sizes (default: 1)
- -mersizes
-
specify mer sizes as non-empty sequence of non decreasing positive integers
- -output
-
use combination of the following keywords: unique nonunique nonuniquemulti relative total to specify kind of output
- -scan [yes|no]
-
read suffixerator-index sequentially instead of mapping it to memory (default: no)
- -v [yes|no]
-
be verbose (default: no)
- -help
-
display help and exit
- -version
-
display version information and exit
REPORTING BUGS
Report bugs to <kurtz@zbh.uni-hamburg.de>.