NAME
gt-stat - Show statistics about features contained in GFF3 files.
SYNOPSIS
gt stat [option …] [GFF3_file …]
DESCRIPTION
- -genelengthdistri [yes|no]
-
show gene length distribution (default: no)
- -genescoredistri [yes|no]
-
show gene score distribution (default: no)
- -exonlengthdistri [yes|no]
-
show exon length distribution (default: no)
- -exonnumberdistri [yes|no]
-
show exon number distribution (default: no)
- -intronlengthdistri [yes|no]
-
show intron length distribution (default: no)
- -cdslengthdistri [yes|no]
-
show CDS length distribution (measured in amino acids) (default: no)
- -source [yes|no]
-
show the set of used source tags (column 2 in regular GFF3 lines) (default: no)
- -addintrons [yes|no]
-
add intron features between existing exon features (before computing stats) (default: no)
- -v [yes|no]
-
be verbose (default: no)
- -o [filename]
-
redirect output to specified file (default: undefined)
- -gzip [yes|no]
-
write gzip compressed output file (default: no)
- -bzip2 [yes|no]
-
write bzip2 compressed output file (default: no)
- -force [yes|no]
-
force writing to output file (default: no)
- -help
-
display help and exit
- -version
-
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.