NAME
gt-sequniq - Filter out repeated sequences in given sequence files.
SYNOPSIS
gt sequniq [option …] sequence_file […]
DESCRIPTION
- -rev [yes|no]
-
also filter out sequences whose reverse complement is identical to a sequence already output (default: no)
- -v [yes|no]
-
be verbose (default: no)
- -width [value]
-
set output width for FASTA sequence printing (0 disables formatting) (default: 0)
- -o [filename]
-
redirect output to specified file (default: undefined)
- -gzip [yes|no]
-
write gzip compressed output file (default: no)
- -bzip2 [yes|no]
-
write bzip2 compressed output file (default: no)
- -force [yes|no]
-
force writing to output file (default: no)
- -help
-
display help and exit
- -version
-
display version information and exit
The tool will only remove identical duplicates of sequences, not substrings contained within other sequences.
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.