NAME
gt-seqstat - Calculate statistics for fasta file(s).
SYNOPSIS
gt seqstat [options] file […]
DESCRIPTION
- -v [yes|no]
-
be verbose (default: no)
- -distlen [yes|no]
-
show distribution of sequence length (default: no)
- -b [value]
-
bucket size for distlen option (default: 100)
- -binary [yes|no]
-
use a binary format for distlen output output filename: <first_input_filename>.distlen bucketsize: 1 (default: no)
- -contigs [yes|no]
-
summary of contigs set statistics (default: yes)
- -nstats
-
list of N-values to calculate statistics for, terminated by --; if none given, N50 and N80 will be calculated
- -astretch [yes|no]
-
show distribution of A-substrings (default: no)
- -genome [value]
-
set genome length for NG50/NG80 calculation (default: 0)
- -help
-
display help for basic options and exit
- -help+
-
display help for all options and exit
- -version
-
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.