NAME
gt-seqfilter - Filter the given sequence file(s) and show the results on stdout.
SYNOPSIS
gt seqfilter [option …] [sequence_file …]
DESCRIPTION
- -minlength [value]
-
set minimum length a sequence must have to pass the filter (default: undefined)
- -maxlength [value]
-
set maximum length a sequence can have to pass the filter (default: undefined)
- -maxseqnum [value]
-
set the maximum number of sequences which can pass the filter (default: undefined)
- -sample [value]
-
set a probability for each sequence to pass the filter (default: 1.000000)
- -step [value]
-
only every step-th sequence passes the filter (default: 1)
- -nowildcards [yes|no]
-
filter out seqences containing wildcards (default: no)
- -width [value]
-
set output width for FASTA sequence printing (0 disables formatting) (default: 0)
- -o [filename]
-
redirect output to specified file (default: undefined)
- -gzip [yes|no]
-
write gzip compressed output file (default: no)
- -bzip2 [yes|no]
-
write bzip2 compressed output file (default: no)
- -force [yes|no]
-
force writing to output file (default: no)
- -help
-
display help and exit
- -version
-
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.