NAME
gt-ltrclustering - Cluster features of LTRs.
SYNOPSIS
gt ltrclustering [option …] indexname [GFF3_file …]
DESCRIPTION
- -psmall [value]
-
specify how many percent of the smaller sequence a match needs to cover in order to cluster the two sequences of the match. (default: 0)
- -plarge [value]
-
specify how many percent of the larger sequence a match needs to cover in order to cluster the two sequences of the match. (default: 0)
- -o [filename]
-
redirect output to specified file (default: undefined)
- -gzip [yes|no]
-
write gzip compressed output file (default: no)
- -bzip2 [yes|no]
-
write bzip2 compressed output file (default: no)
- -force [yes|no]
-
force writing to output file (default: no)
- -help
-
display help and exit
- -version
-
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.