NAME
gt-featureindex - Retrieve annotations from a persistent feature index as GFF3 output.
SYNOPSIS
gt featureindex [option …] indexfilename
DESCRIPTION
- -range [start end]
-
range constraint for index query (default: undefined)
- -seqid [string]
-
sequence region (default: undefined)
- -retain [yes|no]
-
retain attributes (default: yes)
- -backend […]
-
database backend to use choose from [sqlite] (default: sqlite)
- -filename [string]
-
filename for feature database (sqlite backend only) (default: undefined)
- -v [yes|no]
-
be verbose (default: no)
- -help
-
display help and exit
- -version
-
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.