NAME
gt-encseq-decode - Decode/extract encoded sequences.
SYNOPSIS
gt encseq decode (sequence_file|indexname)
DESCRIPTION
- -mirrored [yes|no]
-
virtually append the reverse complement of each sequence (default: no)
- -lossless [yes|no]
-
allow lossless original sequence retrieval (default: no)
- -dir [string]
-
specify reading direction (fwd, cpl, rev, rcl) (default: fwd)
- -singlechars [yes|no]
-
do not use a GtEncseqReader but access each sequence character separately (default: no)
- -seq [value]
-
extract sequence identified by its number (default: undefined)
- -seqrange [start end]
-
extract multiple consecutive sequences (default: undefined)
- -output […]
-
specify output format (choose from fasta|concat) (default: fasta)
- -range [start end]
-
concatenated range to extract (implies -output concat) (default: undefined)
- -sepchar [string]
-
specify character to print as GT_SEPARATOR (default: |)
- -help
-
display help for basic options and exit
- -help+
-
display help for all options and exit
- -version
-
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.