NAME
gt-convertseq - Parse and convert sequence file formats (FASTA/FASTQ, GenBank, EMBL).
SYNOPSIS
gt convertseq [options] file […]
DESCRIPTION
- -v [yes|no]
-
be verbose (default: no)
- -r [yes|no]
-
reverse complement sequences (default: no)
- -showfilelengthvalues [yes|no]
-
show filelengths (default: no)
- -noseq [yes|no]
-
do not show sequences (default: no)
- -fastawidth [value]
-
FASTA output line width, 0 for unlimited (default: 60)
- -contractdnawc [yes|no]
-
replace stretches of DNA wildcards with a single N (default: no)
- -contractproteinwc [yes|no]
-
replace stretches of protein wildcards with a single X (default: no)
- -o [filename]
-
redirect output to specified file (default: undefined)
- -gzip [yes|no]
-
write gzip compressed output file (default: no)
- -bzip2 [yes|no]
-
write bzip2 compressed output file (default: no)
- -force [yes|no]
-
force writing to output file (default: no)
- -help
-
display help and exit
- -version
-
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.