NAME
gt-compreads-refdecompress - Decodes a given RCR (Reference Compressed Reads).
SYNOPSIS
gt compreads refdecompress [option …] (-file file)
DESCRIPTION
- -v [yes|no]
-
be verbose (default: no)
- -qnames [yes|no]
-
decode read names, default is to just number them (default: no)
- -ref [string]
-
Index file (generated by the gt encseq tool) for reference genome. (default: undefined)
- -rcr [string]
-
specify base name of file containing RCR. (default: undefined)
- -name [string]
-
specify base name for decoded RCR (suffix will be ".rcr.decoded") (default: undefined)
- -help
-
display help and exit
- -version
-
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.