NAME
gt-compreads-decompress - Decodes a file of compressed reads.
SYNOPSIS
gt compreads decompress [option …] (-file file)
DESCRIPTION
- -v [yes|no]
-
be verbose (default: no)
- -descs [yes|no]
-
enable description decoding (default: no)
- -file [string]
-
specify base name of files containing HCR. (default: undefined)
- -name [string]
-
specify base name for decoded hcr (suffix will be ".fastq") (default: undefined)
- -smap [string]
-
specify file containing alphabetdescription (file must be an .al1 file). If "-smap" is not set, dna alphabet is used. (default: undefined)
- -range [start end]
-
decode multiple consecutive reads. If range is not specified, the entire file will be decoded. (default: undefined)
- -width [value]
-
set width of output, 0 disables formatting. line breaks in quality strings can cause problems with parsers, use with care (default: 0)
- -help
-
display help and exit
- -version
-
display version information and exit
REPORTING BUGS
Report bugs to https://github.com/genometools/genometools/issues.