NAME

gt-readjoiner - Readjoiner: a string graph-based sequence assembler.

SYNOPSIS

gt readjoiner [option …] tool [argument …]

DESCRIPTION

-help

display help and exit

-version

display version information and exit

Please consult the Readjoiner manual for more information.

Tools:

  • prefilter prepare the readset for Readjoiner

  • overlap calculate suffix-prefix matches

  • assembly construct string graph and output contigs

REPORTING BUGS

Report bugs to https://github.com/genometools/genometools/issues.