NAME

gt-ltrclustering - Cluster features of LTRs.

SYNOPSIS

gt ltrclustering [option …] indexname [GFF3_file …]

DESCRIPTION

-psmall [value]

specify how many percent of the smaller sequence a match needs to cover in order to cluster the two sequences of the match. (default: 0)

-plarge [value]

specify how many percent of the larger sequence a match needs to cover in order to cluster the two sequences of the match. (default: 0)

-o [filename]

redirect output to specified file (default: undefined)

-gzip [yes|no]

write gzip compressed output file (default: no)

-bzip2 [yes|no]

write bzip2 compressed output file (default: no)

-force [yes|no]

force writing to output file (default: no)

-help

display help and exit

-version

display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.