NAME

gt-compreads-refdecompress - Decodes a given RCR (Reference Compressed Reads).

SYNOPSIS

gt compreads refdecompress [option …] (-file file)

DESCRIPTION

-v [yes|no]

be verbose (default: no)

-qnames [yes|no]

decode read names, default is to just number them (default: no)

-ref [string]

Index file (generated by the gt encseq tool) for reference genome. (default: undefined)

-rcr [string]

specify base name of file containing RCR. (default: undefined)

-name [string]

specify base name for decoded RCR (suffix will be ".rcr.decoded") (default: undefined)

-help

display help and exit

-version

display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.