NAME

gt-compreads-decompress - Decodes a file of compressed reads.

SYNOPSIS

gt compreads decompress [option …] (-file file)

DESCRIPTION

-v [yes|no]

be verbose (default: no)

-descs [yes|no]

enable description decoding (default: no)

-file [string]

specify base name of files containing HCR. (default: undefined)

-name [string]

specify base name for decoded hcr (suffix will be ".fastq") (default: undefined)

-smap [string]

specify file containing alphabetdescription (file must be an .al1 file). If "-smap" is not set, dna alphabet is used. (default: undefined)

-range [start end]

decode multiple consecutive reads. If range is not specified, the entire file will be decoded. (default: undefined)

-width [value]

set width of output, 0 disables formatting. line breaks in quality strings can cause problems with parsers, use with care (default: 0)

-help

display help and exit

-version

display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.