NAME

gt-bed_to_gff3 - Parse BED file and convert it to GFF3.

SYNOPSIS

gt bed_to_gff3 [BED_file]

DESCRIPTION

-featuretype [string]

Set type of parsed BED features (default: BED_feature)

-thicktype [string]

Set type of parsed thick BED features (default: BED_thick_feature)

-blocktype [string]

Set type of parsed BED blocks (default: BED_block)

-o [filename]

redirect output to specified file (default: undefined)

-gzip [yes|no]

write gzip compressed output file (default: no)

-bzip2 [yes|no]

write bzip2 compressed output file (default: no)

-force [yes|no]

force writing to output file (default: no)

-help

display help and exit

-version

display version information and exit

REPORTING BUGS

Report bugs to <gt-users@genometools.org>.